scRNAseq

Annotating unknown clusters in scRNAseq data using CIPR: A cross-species reference comparison

We have recently published a Shiny (R) app called Cluster Identity Predictor (CIPR) in BMC Bioinformatics that helps annotate unknown clusters in single cell RNAseq (scRNAseq) datasets. CIPR does its thing by comparing the gene expression signatures of unknown clusters against signatures from known cell types.